I2K 2020

Interactive 3D and virtual reality visualization for scientific images with sciview
Tutors:
Kyle Harrington, [email protected]
Ulrik Günther, [email protected]
Sessions:
2020-11-30 14:00      –      2020-11-30 17:00 UTC
2020-12-01 08:00      –      2020-12-01 11:00 UTC
For more details on the 2020 I2K workshop see: https://www.janelia.org/you-janelia/conferences/from-images-to-knowledge-with-imagej-friends/virtual-workshop-program​
Pre-workshop instructions
Getting Fiji
1.Follow the Fiji installation instructions, if it is not already installed.
2.Install the sciview update site using these instructions​
For Linux64, try our prepackaged Linux64 Fiji here if you have issues
Getting the data
scripts used in the workshop can be downloaded here - if you don't want to use git, you can just click the green Code button, and click Download ZIP
data for the 3D segmentation demo can be downloaded here from the CREMI challenge​
Developer session
Please sign up for a Github account if you do not already have one. If you are proficient at git, then this is not necessary
To follow along with the developer session, we strongly recommend downloading IntelliJ. It will be difficult to provide support for any other development environment during the tutorial session.
Syllabus
Introductions (Ulrik, Kyle, and everyone attending)
Getting your sciview and development environment setup
Overview of the sciview project
Making your first scene​
Working with volumetric data​
Working with meshes​
Creating sciview scripts​
Making your first sciview demo command​
​Custom point clouds​
​3D segmentation data​
​Virtual and augmented reality​
​Survey​

Last modified 2yr ago