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  • Welcome
  • Installation
    • Installing Fiji
    • Installing the sciview plugin for Fiji
    • Installing the development version of the sciview plugin for Fiji
  • Demo Gallery & Recipes
    • Published Examples
    • Feature Demos
    • Recipes
  • Basics
    • First Scene
    • Volumetric Data
    • Mesh Processing
  • Image Analysis
    • Creating and Exporting Isosurfaces
    • Image Registration
    • Voxelization
  • Complex Data
    • Point Clouds
    • 3D Segmentations
  • Scripting
    • First scripts
    • Animations
    • Find and Count Cells
  • VR & AR
    • VR & AR
  • Development
    • First Demo Command
    • Customizing the Inspector
    • Update sites
    • Benchmarking
  • Workshops
    • HIP 2021
    • I2K 2020
  • Surveys
    • I2K 2020
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On this page
  • Interactive 3D and virtual reality visualization for scientific images with sciview
  • Pre-workshop instructions
  • Syllabus

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  1. Workshops

I2K 2020

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Last updated 4 years ago

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Interactive 3D and virtual reality visualization for scientific images with sciview

Tutors:

  • Kyle Harrington, kyle.harrington@mdc-berlin.de

  • Ulrik Günther, ulrik.guenther@hzdr.de

Sessions:

  • 2020-11-30 14:00 – 2020-11-30 17:00 UTC

  • 2020-12-01 08:00 – 2020-12-01 11:00 UTC

For more details on the 2020 I2K workshop see:

Pre-workshop instructions

Getting Fiji

  1. Follow the , if it is not already installed.

  2. Install the sciview update site using

For Linux64, try our prepackaged Linux64 Fiji if you have issues

Getting the data

  • scripts used in the workshop can be downloaded - if you don't want to use git, you can just click the green Code button, and click Download ZIP

  • data for the 3D segmentation demo can be downloaded from the

Developer session

Syllabus

  • Introductions (Ulrik, Kyle, and everyone attending)

  • Getting your sciview and development environment setup

  • Overview of the sciview project

Please if you do not already have one. If you are proficient at git, then this is not necessary

To follow along with the developer session, we strongly recommend . It will be difficult to provide support for any other development environment during the tutorial session.

Making your

Working with

Working with

Creating

Making your

https://www.janelia.org/you-janelia/conferences/from-images-to-knowledge-with-imagej-friends/virtual-workshop-program
Fiji installation instructions
these instructions
here
here
here
CREMI challenge
sign up for a Github account
downloading IntelliJ
first scene
volumetric data
meshes
sciview scripts
first sciview demo command
Custom point clouds
3D segmentation data
Virtual and augmented reality
Survey