HIP 2021
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The summer school is being hosted in gather:
Tutors:
Kyle Harrington, Max Delbrueck Center for Molecular Medicine, kyle.harrington@mdc-berlin.de
Deborah Schmidt, Max Delbrueck Center for Molecular Medicine, deborah.schmidt@mdc-berlin.de
Giuseppe Barbieri, Center for Advanced Systems Understanding (CASUS)
@ HZDR, g.barbieri@hzdr.de
Justin Buerger, Center for Advanced Systems Understanding (CASUS)
@ HZDR, burger@mpi-cbg.de
Sessions:
2021-09-28 13:00 – 2021-09-28 17:00 CEST
For more details here:
If you use Windows or MacOS, then we suggest following the Getting Fiji instructions.
If you use Linux, then we suggest following the Running sciview through Python instructions.
Download
Unzip the contents and go to that location in your terminal
In your terminal: conda env create -f sciview-hip.yml
In your terminal: conda activate sciview-hip
In your terminal: python launch.py
data for the 3D segmentation demo can be downloaded
same file.
Introductions (Kyle, Deborah, Giuseppe, Justin, and everyone attending)
Getting your sciview and development environment setup
Overview of the sciview project
Follow the , if it is not already installed.
Install the sciview update site using
Install Miniconda,
scripts used in the workshop can be downloaded - if you don't want to use git, you can just click the green Code button, and click Download ZIP
from the
. The security certificate on
the CREMI site is currently expired. Here is a to the
Please if you do not already have one. If you are proficient at git, then this is not necessary
To follow along with the developer session, we strongly recommend . It will be difficult to provide support for any other development environment during the tutorial session.
Making your
Working with
Working with
Creating
Making your